Computational Model Library

Our mission is to help computational modelers develop, document, and share their computational models in accordance with community standards and good open science and software engineering practices. Model authors can publish their model source code in the Computational Model Library with narrative documentation as well as metadata that supports open science and emerging norms that facilitate software citation, computational reproducibility / frictionless reuse, and interoperability. Model authors can also request private peer review of their computational models. Models that pass peer review receive a DOI once published.

All users of models published in the library must cite model authors when they use and benefit from their code.

Please check out our model publishing tutorial and feel free to contact us if you have any questions or concerns about publishing your model(s) in the Computational Model Library.

Displaying 10 of 199 results for "Michel De Garine-Wichatitsky" clear search

A simple emulation-based computational model

Carlos M Fernández-Márquez Francisco J Vázquez | Published Tuesday, May 21, 2013 | Last modified Tuesday, February 05, 2019

Emulation is one of the simplest and most common mechanisms of social interaction. In this paper we introduce a descriptive computational model that attempts to capture the underlying dynamics of social processes led by emulation.

00 PSoup V1.22 – Primordial Soup

Garvin Boyle | Published Thursday, April 13, 2017

PSoup is an educational program in which evolution is demonstrated, on the desk-top, as you watch. Blind bugs evolve sophisticated heuristic search algorithms to be the best at finding food fast.

GenoScope

Kristin Crouse | Published Wednesday, May 29, 2024 | Last modified Wednesday, April 09, 2025

GenoScope is a modular agent-based model designed to simulate how cells respond to environmental stressors or other treatment conditions across species. Genes, treatment conditions, and cell physiology outcomes are represented as interacting agents that influence each other’s behavior over time. Rather than imposing fixed interaction rules, GenoScope initializes with randomized regulatory logic and calibrates rule sets based on empirical data. Calibration is grounded in a common-garden experiment involving 16 mammalian species—including humans, dolphins, bats, and camels—exposed to varying levels of temperature, glucose, and oxygen. This comparative approach enables the identification of mechanisms by which animal cells achieve robustness under extreme environmental conditions.

Peer reviewed The Andean Resource Management Model (ARMM)

Olga Palacios | Published Tuesday, January 20, 2026

ARMM is a theoretical agent-based model that formalizes Murra’s Theory of Verticality (Murra, 1972) to explore how multi-zonal resource management systems emerge in mountain landscapes. The model identifies the social, political, and economic mechanisms that enable vertical complementarity across ecological gradients.
Built in NetLogo, ARMM employs an abstract 111×111 grid divided into four Andean ecological zones (Altiplano, Highland, Lowland, Coast), each containing up to 18 resource types distributed according to ecological suitability. To test general theoretical principles rather than replicate specific geography, resource locations are randomized at each model initialization.
Settlement agents pursue one of two economic strategies: diversification (seeking resource variety, maximum 2 units per type) or accumulation (maximising total quantity, maximum 30 units). Agents move between adjacent zones through hierarchical decision-making, first attempting peaceful interactions—coexistence (governed by tolerance) and trading (governed by cooperation)—before resorting to conflict (theft or takeover, governed by belligerence).
The model demonstrates that vertical complementarity can emerge through fundamentally different mechanisms: either through autonomous mobility under political decentralization or through state-coordinated redistribution under centralization. Sensitivity analysis reveals that belligerence and economic strategy explain approximately 25% of outcome variance, confirming that structural inequalities between zones result from political-economic organization rather than environmental constraints alone.
As a preliminary theoretical model, ARMM intentionally maintains simplicity to isolate core mechanisms and generate testable hypotheses. This foundational framework will guide future empirically-calibrated versions that incorporate specific archaeological settlement data and geographic features from the Carangas region (Bolivia-Chile border), enabling direct comparison between theoretical predictions and observed historical patterns.

Micro-level Adaptation, Macro-level Selection, and the Dynamics of Market Partitioning

César García-Díaz | Published Monday, October 19, 2015 | Last modified Monday, October 19, 2015

This model simulates the emergence of a dual market structure from firm-level interaction. Firms are profit-seeking, and demand is represented by a unimodal distribution of consumers along a set of taste positions.

FLOSSSim: An Agent-Based Model of the Free/Libre Open Source Software (FLOSS) Development Process

Nicholas Radtke | Published Saturday, December 31, 2011 | Last modified Saturday, April 27, 2013

An agent-based model of the Free/Libre Open Source Software (FLOSS) development process designed around agents selecting FLOSS projects to contribute to and/or download.

The model implements a double auction financial markets with two types of agents: rational and noise. The model aims to study the impact of different compensation structure on the market stability and market quantities as prices, volumes, spreads.

Viable North Sea (ViNoS) is an Agent-based Model of the German North Sea Small-scale Fisheries in a Social-Ecological Systems framework focussing on the adaptive behaviour of fishers facing regulatory, economic, and resource changes. Small-scale fisheries are an important part both of the cultural perception of the German North Sea coast and of its fishing industry. These fisheries are typically family-run operations that use smaller boats and traditional fishing methods to catch a variety of bottom-dwelling species, including plaice, sole, and brown shrimp. Fisheries in the North Sea face area competition with other uses of the sea – long practiced ones like shipping, gas exploration and sand extractions, and currently increasing ones like marine protection and offshore wind farming. German authorities have just released a new maritime spatial plan implementing the need for 30% of protection areas demanded by the United Nations High Seas Treaty and aiming at up to 70 GW of offshore wind power generation by 2045. Fisheries in the North Sea also have to adjust to the northward migration of their established resources following the climate heating of the water. And they have to re-evaluate their economic balance by figuring in the foreseeable rise in oil price and the need for re-investing into their aged fleet.

Structure of Scientific Revolutions

Rogier De Langhe | Published Friday, September 02, 2016 | Last modified Tuesday, December 04, 2018

An agent-based model of Thomas Kuhn’s Structure of Scientific Revolutions

Oneshot negotiation in Colored Trails

Harmen de Weerd | Published Tuesday, April 09, 2019

This model allows for oneshot negotiations in the Colored Trails setting. Two allocator agents simultaneously make an offer to a responder agent, who chooses which of these offers to accept, or to reject both offers. The code allows for allocator allocator agents of different orders of theory of mind reasoning to play against one another.

Displaying 10 of 199 results for "Michel De Garine-Wichatitsky" clear search

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