The code shared here accompanies the paper at https://doi.org/10.1371/journal.pone.0208451. It simulates the effects of various economic trade scenarios on the phenomenon of the ‘disappearing middle’ in the Scottish beef and dairy farming industries. The ‘disappearing middle’ is a situation in which there is a simultaneous observed decline in medium-sized enterprises and rise in the number of small and large-scale enterprises.

This model was design to test parameters that affects the number of people shot during mass shooting. This basic formulation places a gunman in a crowd and allows the users to manipulate parameters of the gunman.

Individually parameterized mussels (Mytilus californianus) recruit, grow, move and die in a 3D environment while facing predation (in the form of seastar agents), heat and desiccation with increased tide height, and storms. Parameterized with data collected by Wootton, Paine, Kandur, Donahue, Robles and others. See my 2019 CoMSES video presentation to learn more.

A first version of a model that describes how coalitions are formed during open, networked innovation

SONG is a simulator designed for simulating the process of transportation network growth.

MHCABM is an agent-based, multi-hazard risk interaction model with an integrated applied dynamic adaptive pathways planning component. It is designed to explore the impacts of climate change adaptation decisions on the form and function of a coastal human-environment system, using as a case study an idealised patch based representation of the Mount North-Omanu area of Tauranga city, New Zealand. The interacting hazards represented are erosion, inundation, groundwater intrusion driven by intermittent heavy rainfall / inundations (storm) impacts, and sea level rise.

The model was built to study the links between consumer credit, wealth distribution and aggregate demand in a complex macroeconomics system.

Organisms, Individuals and Organizations face the dilemma of exploration vs. exploitation
Identifying the optimal trade-off between the two is a challenge
Too much exploration (e.g. gaining new knowledge) can be detrimental to day-to-day survival and too much exploitation (applying existing knowledge) could be detrimental to long term survival esp. if conditions change over time

The purpose of the model is to investigate how the amount of resources acquired (wealth/success) is related to persistence with the strategy of local exploration under different resource distributions, availability of resources over time and cost of relocation

The Simulating Agroforestry Adoption in Rural Indonesia (SAFARI) model aims at exploring the adoption of illipe rubber agroforestry systems by farming households in the case study region in rural Indonesia. Thereby, the ABM simulates the interdependencies of agroforestry systems and local livelihoods, income, land use, biodiversity, and carbon fixation. The model contrasts development paths without agroforestry (business as usual (BAU) scenario), corresponding to a scenario where the government promotes rubber monoculture, with the introduction of illipe rubber agroforestry systems (IRA scenario) as an alternative. It aims to support policy-makers to assess the potential of IRA over larger temporal and spatial scales.

This agent-based model simulates the implementation of a Transfer of Development Rights (TDR) mechanism in a stylized urban environment inspired by Dublin. It explores how developer agents interact with land parcels under spatial zoning, conservation protections, and incentive-based policy rules. The model captures emergent outcomes such as compact growth, green and heritage zone preservation, and public cost-efficiency. Built in NetLogo, the model enables experimentation with variable FSI bonuses, developer behavior, and spatial alignment of sending/receiving zones. It is intended as a policy sandbox to test market-aligned planning tools under behavioral and spatial uncertainty.